Bérénice Batut

Favourite Topics

Favourite Formats

Contributions

The following list includes only slides and tutorials where the individual has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

GitHub Activity

Tutorials

Slides

News

New Topic: Data Science Survival Kit

Author(s)

Helena Rasche

Yvan Le Bras

The Carpentries

As part of our work under the Gallantries Grant we are establishing a new topic within the GTN specifically focused on Data Science skills. This topic will include tutorials covering things such as:

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Got a minute? Take our survey about Galaxy for training and have your say!

Adversitement for the survey. Written: Got a minute? Did you use Galaxy for training / teaching? Have your say... Take our survey. We appreciate your feedback. Logos: Galaxy Project and Galaxy Training Network

Authors:

Do you use Galaxy for Training? Have your say! Please take a few minutes to let us know about your training experiences.

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New Feature: a feedback page to aggregate and display feedback answers

Screenshot of the top of the feedback page with the titles and 2 graphs: the cumulative number of feedback answers over month for all topics, and a barplot with number of answers for different scores

Authors:

As you have probably already seen, a feedback form is embedded on the bottom of each tutorial.

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New Tutorial: Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data

Analysis flow in the 'Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data' tutorial. It teaches how to obtain, run and combine workflows appropriately for 4 different types of input data. Image adapted from covid19.galaxyproject.org

Authors:

Effectively monitoring global infectious disease crises, such as the COVID-19 pandemic, requires capacity to generate and analyze large volumes of sequencing data in near real time. These data have proven essential for monitoring the emergence and spread of new variants, and for understanding the evolutionary dynamics of the virus.

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New Feature: FAQs

Authors:

Snippets have received an major overhaul! Snippets/FAQs are small reusable bits of training, often answering a single question. In addition to the general Galaxy snippets, we now also support topic-level and tutorial-level FAQs. This will allow contributors to add common questions and answers to their tutorials, which not only can be included in the tutorial text itself, but are also used to autogenerate an FAQ page for the tutorial or topic listing all common questions (and answers).This will be useful both to participants following tutorials via self-study, and also to instructors preparing for a training event.

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Next GTN CoFest May 20, 2021

Authors:

Every 3 months we organise one day dedicated to the GTN community! Thursday, May 20th is the next GTN CoFest. We will be working on the training materials, have discussions with the global Galaxy traning community. Do you teach with Galaxy? Want to learn how to add your tutorial to the GTN? New to the community and just want to learn more? Everybody is welcome!

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