Introduction to Galaxy Analyses

Galaxy is a scientific workflow, data integration, and data and analysis persistence and publishing platform that aims to make computational biology accessible to research scientists that do not have computer programming experience.

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Material

Your First Analysis

These are the core, foundational topics for learning how to use Galaxy.

Lesson Slides Hands-on Recordings Input dataset Workflows Galaxy servers
Introduction to Galaxy
A short introduction to Galaxy
From peaks to genes
Galaxy 101
    • Galaxy 101 for everyone
    • Introduction to Genomics and Galaxy

    Go a bit further

    Explore the Galaxy a bit further after you've finished the basics.

    Lesson Slides Hands-on Recordings Input dataset Workflows Galaxy servers
    Data Manipulation Olympics
    How to reproduce published Galaxy analyses
    IGV Introduction
    NGS data logistics
    • Options for using Galaxy

    Galaxy instances

    You can use a public Galaxy instance which has been tested for the availability of the used tools. They are listed along with the tutorials above.

    You can also use the following Docker image for these tutorials:

    docker run -p 8080:80 quay.io/galaxy/introduction-training

    NOTE: Use the -d flag at the end of the command if you want to automatically download all the data-libraries into the container.

    It will launch a flavored Galaxy instance available on http://localhost:8080. This instance will contain all the tools and workflows to follow the tutorials in this topic. Login as admin with password password to access everything.

    Frequently Asked Questions

    Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

    Maintainers

    This material is maintained by:

    orcid logoAvatarJennifer Hillman-Jackson AvatarDave Clements

    For any question related to this topic and the content, you can contact them or visit our Gitter channel.

    Contributors

    This material was contributed to by:

    AvatarAndrea Bagnacani orcid logoAvatarBérénice Batut orcid logoAvatarSaskia Hiltemann AvatarAnne Pajon orcid logoAvatarNicola Soranzo orcid logoAvatarHelena Rasche AvatarChristopher Barnett AvatarMichele Maroni AvatarAnne Fouilloux orcid logoAvatarNadia Goué AvatarOlha Nahorna AvatarDave Clements AvatarAnna Syme AvatarClemens Blank orcid logoAvatarBjörn Grüning AvatarDilmurat Yusuf AvatarSarah Peter AvatarAnton Nekrutenko orcid logoAvatarMelanie Föll AvatarJoachim Wolff AvatarCristóbal Gallardo AvatarMarius van den Beek orcid logoAvatarDaniel Blankenberg orcid logoAvatarAnthony Bretaudeau AvatarAlaa Elghamry