Using Galaxy and Managing your Data
A collection of microtutorials explaining various features of the Galaxy user interface and manipulating data within Galaxy.
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Material
Uploading Data
These tutorials will help you get data into Galaxy, before you analyse it.Histories
Managing your analysis histories efficientlyLesson | Slides | Hands-on | Recordings | Galaxy servers |
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Searching Your History
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tutorial Toggle Dropdown | |||
Understanding Galaxy history system
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tutorial Toggle Dropdown |
Making Data Manageable
Now that you have data in Galaxy, let's make it easier to work with through collections and structured data.Lesson | Slides | Hands-on | Recordings | Galaxy servers |
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Group tags for complex experimental designs
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tutorial Toggle Dropdown | |||
Multisample Analysis | tutorial Toggle Dropdown | |||
Name tags for following complex histories
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tutorial Toggle Dropdown | |||
Using dataset collections | tutorial Toggle Dropdown |
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Workflows
Using Galaxy workflows to scale analysisAnalysing Data
Some advanced topics in data analysis.Lesson | Slides | Hands-on | Recordings | Galaxy servers |
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InterMine integration with Galaxy
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tutorial Toggle Dropdown | instances | ||
JupyterLab in Galaxy | tutorial Toggle Dropdown | |||
RStudio in Galaxy | tutorial Toggle Dropdown | |||
Use Jupyter notebooks in Galaxy
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tutorial Toggle Dropdown |
Download and free up space
Once you are done with your analyses in Galaxy, it's time to download your data and free up space.Lesson | Slides | Hands-on | Recordings | Galaxy servers |
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Downloading and Deleting Data in Galaxy
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tutorial Toggle Dropdown |
Other
search
galaxy-cross
Assorted tutorials
Lesson | Slides | Hands-on | Recordings | Galaxy servers |
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Submitting sequence data to ENA | plain text Toggle Dropdown | tutorial Toggle Dropdown | instances |
Frequently Asked Questions
Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.Maintainers
This material is maintained by:
Jennifer Hillman-Jackson Helena RascheFor any question related to this topic and the content, you can contact them or visit our Gitter channel.
Contributors
This material was contributed to by:
Simon Bray Wolfgang Maier Marius van den Beek Simon Gladman Helena Rasche Dave Clements Avani Khadilkar Elizabeth Sheets Charles Overbeck Enis Afgan Anne Pajon Maria Doyle Saskia Hiltemann Daniela Butano Yo Yehudi Anton Nekrutenko Bérénice Batut Fotis E. Psomopoulos Toby Hodges Erasmus+ Programme John Chilton Jon Trow Adelaide Rhodes Miguel Roncoroni Bert Droesbeke Martin Čech Delphine Lariviere