Contributions

A number of our employees contribute directly to the Galaxy Training Network and seek to make our higher education learning materials more accessible to a wider audience through the GTN platform. avans.nl

GitHub Activity

github Pull Requests
github Commits
github Issues Reported

Tutorials

Assembly / Genome Assembly of MRSA using Oxford Nanopore MinION Data 💵
Assembly / Genome Assembly of MRSA using Illumina MiSeq Data 💵
Foundations of Data Science / Python - Multiprocessing 💵
Foundations of Data Science / Advanced SQL
Foundations of Data Science / Virtual Environments For Software Development 💵
Foundations of Data Science / Python - Argparse 💵
Foundations of Data Science / SQL with R
Foundations of Data Science / CLI basics
Foundations of Data Science / Python - Type annotations 💵
Foundations of Data Science / Advanced CLI in Galaxy
Foundations of Data Science / dplyr & tidyverse for data processing
Foundations of Data Science / SQL Educational Game - Murder Mystery
Foundations of Data Science / Python - Testing 💵
Foundations of Data Science / Conda Environments For Software Development 💵
Foundations of Data Science / Make & Snakemake
Foundations of Data Science / Introduction to SQL
Foundations of Data Science / SQL with Python

News

New Feature: Automatic RMarkdown

Image showing content from a tutorial, rendered as an rmarkdown html via knitting. A table of contents appears on the left, and code and outputs on the right.

Author(s)

Helena Rasche

Further building on the work in the automatic Jupyter Notebook, we’ve now re-written the Jupyter export to be faster, and more importantly added support for R and RMarkdown! Check out an example material. Here we take the content of the tutorial, written like normal GTN markdown, and we automatically convert it to Jupyter Notebooks and now RMarkdown documents! Check out the documentation on how to setup your tutorials to support this.

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