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Visualisations in Galaxy

Contributors

last_modification Last modification: Jul 9, 2021

What is Data Visualisation

Selection of numerous graph types include pie, dot, bar, line charts, map and guages.


What is Data Visualisation

Examples of 6 different visualisations in galaxy features an MSA, a couple graphs, RNA structure, and 3d visualisations of proteins


Why visualizations?

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Speaker Notes Anscombes quartet, all these datasets have same mean, standard deviation and correlation, yet when visualizing them it is revealed they have vastly different structures.


Data Visualisation in Galaxy


Genome Browsers

JBrowse screenshot


Genome Browsers in Galaxy


JBrowse

.image-75[ Screenshot of Galaxy showing the configuration interface for JBrowse. ]

Speaker Notes


JBrowse

.image-75[Screenshot of JBrowse showing sequence, some bar charts, a SNP map highlighting snps, and aligned reads.]


Galaxy Charts

Example of list of Galaxy charts


Galaxy Charts


Visualisation Tools

Sample Circos images


Key Points

Thank you!

This material is the result of a collaborative work. Thanks to the Galaxy Training Network and all the contributors! Galaxy Training Network This material is licensed under the Creative Commons Attribution 4.0 International License.