My snippy is running for a very long time. Is this normal?
As this tutorial uses real world data some of the tools can run for quite a while. During a course we can expected longer run times as the Galaxy servers are heavily used. Typically expected runtimes are approximately:
Tool name | Runtime |
---|---|
FastQC | 2 minutes |
MultiQC | 5 minutes |
Trimmomatic | 5 minutes |
kraken2 | 5 - 12 minutes |
snippy | 15 - 25 minutes |
TB Variant Filter | 2 minutes |
TB-Profiler | 5 minutes |
Text transformation | Less than 1 minute |
TB Variant Report | 1 minute |
JBrowse | 5 minutes |
Samtools stats (optional) | 1 minute |
BAM Coverage plotter (optional) | 1 minute |
Still have questions?
Gitter Chat Support
Galaxy Help Forum
Want to embed this snippet (FAQ) in your GTN Tutorial?
{% snippet topics/variant-analysis/tutorials/tb-variant-analysis/faqs/runtime.md %}