The UMAP Plots errors out sometimes?

Try a different colour palette. For upstream code reasons, the default color palette sometimes causes the tool to error out.

• Under Plot attributes, do
  • “Colour map to use for continuous variables”: viridis
  • “Colors to use for plotting categorical annotation groups”: plasma

Still have questions?

Want to embed this snippet (FAQ) in your GTN Tutorial?

{% snippet  topics/transcriptomics/tutorials/scrna-scanpy-pbmc3k/faqs/umap_plot_errors.md %}