The UMAP Plots errors out sometimes?


Try a different colour palette. For upstream code reasons, the default color palette sometimes causes the tool to error out.

  • Under Plot attributes, do
    • “Colour map to use for continuous variables”: viridis
    • “Colors to use for plotting categorical annotation groups”: plasma
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{% snippet  topics/transcriptomics/tutorials/scrna-scanpy-pbmc3k/faqs/umap_plot_errors.md %}