Do I need to create collections to run MaxQuant analysis or can I use single sample inputs?

Collections are not necessary to run MaxQuant but they make the history more clean and easier to navigate. The multiple datasets options allows to select multiple files that are not part of a collection and will give the same result as with a collection as input.

Still have questions?

Want to embed this snippet (FAQ) in your GTN Tutorial?

{% snippet  topics/proteomics/tutorials/maxquant-msstats-dda-lfq/faqs/Maxquant_collection.md %}