Tip: Using IGV with Galaxy You can send data from your Galaxy history to IGV for viewing as follows: Install IGV on your computer (IGV download page) Start IGV In recent versions of IGV, you will have to enable the port: In IGV, go to View > Preferences > Advanced Check the box Enable Port In Galaxy, expand the dataset you would like to view in IGV Make sure you have set a reference genome/database correctly (dbkey) (instructions) Under display in IGV, click on local
You can send data from your Galaxy history to IGV for viewing as follows:
View > Preferences > Advanced
Enable Port
display in IGV
local