Add Mapped reads track to IGV from Galaxy
- Install IGV (if not already installed)
- Launch IGV on your computer
- Check if the reference genome is available on the IGV instance
- Expand the BAM dataset with the mapped reads in the history
- Click on the
local
indisplay with IGV
to load the reads into the IGV browser -
Switch to the IGV instance
The mapped reads track should appear. Be sure that all files have the same genome ID
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{% snippet topics/assembly/faqs/visualizations_igv_view_mapping.md %}