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Galaxy Installation with Ansible

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Objectives

last_modification Last modification: Jun 14, 2022

Install PostgreSQL & Galaxy extensions

Graph showing a Postgres DB

Speaker Notes


Install Galaxy & Attach Storage

Galaxy is now attached to the DB. Gunicorn, storage, and compute are attached to Galaxy

Speaker Notes


Configure NGINX

NGINX is added to proxy Gunicorn

Speaker Notes


Configure Job Handlers

Job Handlers are added, between Galaxy and the Compute

Speaker Notes


Install & Configure Slurm

Slurm is attached to the handlers

Speaker Notes


Connect CVMFS & Reference Data

CVMFS is attached to storage + compute + galaxy

Speaker Notes


Setup Remote Compute

Remote compute site, with Pulsar and compute is attached to the job handlers

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Major Initial Decisions

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Where to install Galaxy

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Where to store Galaxy datasets

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Database location

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Basic best practices

.left[All of these practices are supported in the galaxyproject.galaxy Ansible role and covered in the Galaxy Installation with Ansible tutorial!]

Speaker Notes


Key Points

Thank you!

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