Using compressed fastq data as tool inputs
- If the tool accepts
fastq
input, then.gz
compressed data assigned to the datatypefastq.gz
is appropriate. - If the tool accepts
fastqsanger
input, then.gz
compressed data assigned to the datatypefastqsanger.gz
is appropriate. - Using uncompressed
fastq
data is still an option with tools. The choice is yours.
TIP: Avoid labeling compressed data with an uncompressed datatype, and the reverse. Jobs using mismatched datatype versus actual format will fail with an error.
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{% snippet faqs/galaxy/datatypes_Using_compressed_fastq_data.md %}