Using compressed fastq data as tool inputs
- If the tool accepts
fastqinput, then.gzcompressed data assigned to the datatypefastq.gzis appropriate. - If the tool accepts
fastqsangerinput, then.gzcompressed data assigned to the datatypefastqsanger.gzis appropriate. - Using uncompressed
fastqdata is still an option with tools. The choice is yours.
TIP: Avoid labeling compressed data with an uncompressed datatype, and the reverse. Jobs using mismatched datatype versus actual format will fail with an error.
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